Wednesday, December 19, 2007

Ph.D Thesis In Bioinformatics


Ph.D Thesis In Bioinformatics

Title: Brunswick (0190) D A Novel Neural Network Analysis Method Applied
To Biological Neural Networks.
Author: Dunn, Nathan A.
School: University Of Organ (0171) Date: 2006 Pp: 131

Title: Construction and Computational Complexity of Pooling Designs.
Author: Liu, Zhen
School: The University Of Texas At Dalls (0382) Date : 2006 Pp: 112

Title: Computational Studies of Gene Expression and Sequence Data in Yeast
Author: Pyne , Saumyadipta
School: State University Of NEW YORK At Stony Brook (0771) Date : 2006 Pp : 136

Title: Graph –Based Pattern Discovery in Protein Structures
Author: Huan, Jun
School: The University Of North Carolina At Chapel Hill (0153) Date: 2006 PP : 170

Title: Capturing Atomic Interactions with a Graphical Framework in Computational
Protein Design
Author: Leaver – Fay, Andrew
School: The University Of North Carolina At Chapel Hill (0153) Date: 2006 PP: 244

Title: Using Domain Knowledge for Text Mining
Author: Dayanik, Aynur
School: Rutgers the State University of New Jersey – New ate: 2006 Pp : 135

Title: Consistent Triplets in Graph Clustering For Protein Sequence Analysis
Author: Yun, Hwaseob Joseph
School: Rutgers the State University of New Jersey – New Brunswick (0190)
Date : 2006 Pp : 120


Title: Predicting Evolutionary Changes in Digital Organism
Author: Zhang, Haitao
School: University Of Houstan (0087) Date: 2006 Pp: 123

Title : Discovering Gene Interesting By Image Analysis and By Reverse Engineering
Genetic Networks
Author: Gurunathan, Rajalakshami
School: Arizona State University (0010) Date : 2006 Pp : 164

Title : Resoning and Hypothesizing About Signaling Networks
Author: Tran, Nam
School: Arizona State University (0010) Date : 2006 Pp: 299

Title: Distributed Web Service Coordination for Collaborative Application and
Biological Workflows
Author : Balasooriya, Janaka
School : Georgia State University (0079) Date: 2006 Pp: 32


Title: Algorithms for Computational Genetic Epidemiology
Author : He, Jingwu
School : Georgia State University (0079) Date: 2006 Pp: 146


Title: Proteomics Data Interoperation with Applications to Integrated Data Mining
And Enhanced
Information Retrieval
Author : Smith, Andrew Kendall
School : Yale University (0265) Date: 2006 Pp: 192


Title: Combinatorial and Statistical Approaches for Some Challenges in Oligonucleotide
Fingerprinting On Ribosomal Rna Genes
Author : Liu , Zheng
School : University Of California, Riverside (0032) Date: 2006 Pp: 105


Title: Efficient Algorithms for Identification and Analysis of Repetitive Patterns In
Biological Sequences
Author : Zheng, Jie
School : University Of California, Riverside (0032 Date: 2006 Pp: 94


Title : Genome Rearrangement Algorithms Applied To Comparative Maps
Author : Zheng, Chunfang
School : University Of Ottawa (Canada ) (0918) Degree: Msc Date: 2006 Pp: 60


Title: Assessment of the Use of Topological Quantities In Structural Bioinformatics
Author : Lu, Jiantao
School : Dalhouse University (Canada) (0328) Degree: MCSc Date: 2006 Pp: 95


Title: Exploring Genetic Redundancy and Uniqueness in Arabidopsis Using A
Bioinformatics Approach
Author: Toufighi, Kiana
School: University Of Toronto (Canada) (0779) Degree: MSc Date: 2006 Pp: 84


Title: Hierarchical Text Categorization and Its Application to Bioinformatics
Author: Kiritchenko, Svetlana
School: University Of (Ottawa ) (Canada) (0918) Date: 2006 Pp: 187


Title: On Computational Strategies for Regulatory Element and Regulatory
Polymorphism Detection
Author: Montgomery, Stephen Blair
School: The University Of Columbia (Canada) (2500) Date: 2006 Pp: 182


Title : Integrating Biological Knowledge and Other Data Sources Into Microarray
Data Analysis
Author : Xiao, Guanghua
School : University Of Minnesota (0130) Date: 2006 Pp: 121


Title : Features Of Distributed Thinking In Biomedical Communities
Author : Cokol, Murat
School : Columbia University(0054) Date: 2006 Pp: 149


Title : Integration Of Biological Databases
Author : Ahadian, Azadeh
School : San State University (6265) Degree: MS Date: 2006 Pp: 47


Title: Database System Extensions for Functional Brain Image Analysis, Nterpretation
And Classification: Aiding Clinical Diagnoses and Cognitive Research in Psychiatry
Author: Munch, Kristin Richardson
School: University Of Minnesota (0130) Date: 2006 Pp: 171


Title: Development of Computational Tools for the Design and Optimization
Of Combinatorial Protein Libraries
Author : Saraf, Manish C.
School : The Pennsylvania State University (0176) Date 2006 Pp: 185


Title: Mathematical Modeling and Uncertainty Analysis of Complex Metabolic Networks
Author : Wang, Liqing
School : Northwestern University (0163) Date: 2006 Pp: 181


Title: Information Extraction on Biological, Organic and Inorganic Materials
Using Image Processing Techniques Jahangir, Muhammad
Author : Jahangir , Muhammad
School : Memorial University Of Newfoundland (Canada) (0306) Degree: Msc
Date: 2006 Pp: 102


Title: Algebraic Combinatorics for Computational Biology
Author: Eriksson, Nicholas Karl
School: University Of California, Berkeley (0028) Date: 2006 Pp: 125


Title : Efficient Computational Strategies for Simulating Neural Activity on Branched
Structures
Author: Rempe, Michael J.
School: Northwestern University (0163) Date: 2006 Pp: 184


Title : Efficient Computational Strategies for Simulating Neural Activity on
Branched Structures
Author: Rempe, Michael J.
School: Northwestern University (0163) Date: 2006 Pp: 184


Title : Discovering Gene Interesting By Image Analysis and By Reverse Engineering
Genetic Networks
Author: Guru Nathan, Rajalakshami
School: Arizona State University (0010) Date: 2006 Pp : 164

Title : Algorithms for Computational Genetic Epidemiology
Author: He, Jin9WU
School: Georgia State University (0079) Date: 2006 Pp: 146

Title : Proteomics Data Interoperation with Applications to Integrated Data Mining
and Enhanced Information Retrieval
Author: Smith, Andrew Kendall
School: Yale University (0265) Date: 2006 Pp: 192

Title : Combinatorial and Statistical Approaches for Some Challenges in Oligonucleotide
Fingerprinting On Ribosomal RNA Genes
Author: Liu, Zheng
School: University Of California, Riverside (0032) Date: 2006 Pp: 105


Title: Efficient Algorithms for Identification and Analysis of Repetitive Patterns in
Biological Sequences
Author: Zheng, Jie
School: University Of California, Riverside (0032) Date: 2006 Pp: 94


Title: Genome Rearrangement Algoritnms Applied To Comparative Maps
Author : Zheng, Chunfang
School: University Of Ottawa (Canada) (0918) Degree: Msc Date: 2006 Pp: 60

Title: Assessment of the Use of Topological Quantities in Structural Bioinformatics
Author: Lu, Jiantao
School: Dalhousie University (Canada) (0328) Degree: MCSc Date: 2006 Pp: 95


Title: Exploring Genetic Redundancy and Uniqueness in Arabidopsis Using a
Bioinformatics Approach
Author: Toufighi, Kiana
School: University Of Toronto (Canada) (0779) Degree: Msc Date: 2006 Pp: 84


Title: Hierarchical Text Categorization and Its Application to Bioinformatics
Author: Kiritchenko, Svetlana
School: University Of Ottawa (Canada) (0918) Date: 2006 Pp: 187


Title: On Computational Strategies for Regulatory Element and Regulatory
Polymorphism Detection
Author: Montgomery, Stephen Blair
School: The University Of British Columbia (Canada) (2500) Date: 2006 Pp: 182


Title: Genome Rearrangement Algorithms Applied To Comparative Maps
Author: Zheng, Chunfang
School: University Of Ottawa (Canada) (0918) Degree: Msc Date: 2006 Pp: 60


Title: Assessment of the Use of Topological Quantities in Structural Bioinformatics
Author: Lu, Jiantao
School: Dalhousie University (Canada) (0328) Degree: MCSc Date: 2006 Pp: 95



Title: Exploring Genetic Redundancy and Uniqueness in Arabidopsis Using a
Bioinformatics Approach
Author: oufighi, Kiana
School: University Of Toronto (Canada) (0779) Degree: Msc Date: 2006 Pp: 84


Title: Kiritchenko, Svetlana
School: University Of Ottawa (Canada) (0918) Date: 2006 Pp: 187
Author:

Title: On Computational Strategies for Regulatory Element and Regulatory
Polymorphism Detection
Author: Montgomery, Stephen Blair
School: The University Of British Columbia (Canada) (2500) Date: 2006 Pp: 182


Title: Integrating Biological Knowledge and Other Data Sources into Microarray
Data Analysis
Author: Xiao, Guanghua
School: University Of Minnesota (0130) Date: 2006 Pp: 121


Title: Features of Distributed Thinking in Biomedical Communities
Author: Cokol, Murat
School: Columbia University (0054) Date: 2006 Pp: 149


Title: Integration of Biological Databases
Author: Ahadian, Azadeh
School: San Jose State University (6265) Degree: MS Date: 2006 Pp: 47


Title: Database System Extensions for Functional Brain Image Analysis, Interpretation
and Classification Aiding Clinical Diagnoses and Cognitive Research in Psychiatry
Author: Munch, Kristin Richardson
School: University Of Minnesota (0130) Date: 2006 Pp: 171


Title: Development of Computational Tools for the Design and Optimization of
Protein Libraries of Combinatorial
Author: Saraf, Manish C.
School: The Pennsylvania State University (0176) Date: 2006 Pp: 185


Title: Mathematical Modeling and Uncertainty Analysis of Complex Metabolic Networks
Author: Wang, Liqing
School: Northwestern University (0163) Date: 2006 Pp: 181


Title: Information Extraction on Biological, Organic and organic materials
Author: Jahangir, Muhammad
School: Memorial University Of Newfoundland (Canada) (0306) Degree: Msc
Date: 2006 Pp: 102


Title: Abstracts Algebraic Combinatorics for Computational Biology
Author: Eriksson, Nicholas Karl
School: University Of California, Berkeley (0028) Date: 2006 Pp: 125


Title: Efficient Computational Strategies for Simulating Neural Activity on
Branched Structures
Author: Rempe, Michael J.
School: Northwestern University (0163) Date: 2006 Pp: 184


Title: Numerical estimation of progesterone transcription in the EGFR pathway
Author: Marquez Lago, Tatiana T.
School: The University Of New Mexico (0142) Date: 2006 Pp: 98


Title: Clustering, Classification and Function Estimation for High Dimensional
Data Arising From Bioinformatics and Related Domains
Author: Ghosh, Samiran
School: University Of Connecticut (0056) Date: 2006 Pp: 131


Title: Multivariate Kernel Methods in the Analysis of Graphical Structures
Author: Purdom, Elizabeth
School: Stanford University (0212) Date: 2006 Pp: 209


Title: NanAnalyzi Detection Of Differential Expression
Author: Recknor, Justin C.
School: Iowa State University (0097) Date: 2006 Pp: 109


Title: Parameter Estimation for a Finite Mixture Model in Dimensional Applications
Author: Xiang, Qinfang
School: University Of Missouri - Rolla (0135) Date: 2006 Pp: 106

Title: Bioinformatics Study of Mammalianmrna Polyadenylation
Author: Zhang, Haibo
School: New Jersey Institute Of Technology (0152) Date: 2005 Pp: 108


Title: Topology and Dynamics of an Artificial Genetic Regulatory Network Model
Author: Kuo, P. Dwight
School: Memorial University of Newfoundland (Canada) (0306)


Title: An Anchor-Based Model for Global Multiple Alignment of Whole
Genome Sequences
Author: Ma, Yue
School: Memorial University Of Newfoundland (Canada) (0306) Degree: Msc
Date: 2005 Pp: 91


Title: Identification of Cis-Acting Regulatory Elements Using Orthology Biased
Gibbs Sampling
Author: Boroevich, Keith Anthony
School: Simon Fraser University (Canada) (0791) Degree: Msc Date: 2005 Pp: 77


Title: Bayesian Methods in Bioinformatics
Author: Baladandayuthapani, Veerabhadran
School: Texas A&M University (0803) Date: 2005 Pp: 72


Title: Analyzing And Modeling Large Biological Networks: Inferring Signal
ransduction Pathways
Author: Bebek, Gurkan
School: Case Western Reserve University (0042) Date: 2007 Pp: 140


Title: Predicting Gene Structure In Eukaryotic Genomes
Author: Allen, Jonathan Edward
School: The Johns Hopkins University (0098) Date: 2007 Pp: 201


Title: Exploring the Relationship between Secondary Structure and Native Topology
in Protein Domains
Author: Gong, Haipeng
School: The Johns Hopkins University (0098) Date: 2007 Pp: 123


Title: Supporting On-The-Fly Data Integration for Bioinformatics
Author: Zhang, Xuan
School: The Ohio State University (0168) Date: 2007 Pp: 183


Title: Protein Domain Super families: An Evolutionary Perspective towards
a Non-Redundant Classification of Protein Domain
Author: Cherukuri, Praveen Frazer
School: Boston University (0017) Date: 2007 Pp: 117


Title: Active Learning for Sequential Screening and Classification of Molecular
and Genomic Data
Author: Walker, Megon Jarmaine
School: Boston University (0017) Date: 2007


Title: Identification of Secondary and Tertiary Motifs in DNA Sequences Through
Naive Bayesian Text Classification
Author: Villalobos, Rodney V.
School: Walden University (0543) Date: 2007 Pp: 92 Maurer, Ruth


Title: Ontology Recapitulates Phylogeny: Design, Implementation and Potential for
Usage of a Comparative Anatomy Information System
Author: Travillian, Ravensara S.
School: University Of Washington (0250) Date: 2006 Pp: 132


Title: An Application of Parallel and Distributed Computing Methods to Approximate
Pattern Matching Of Genetic Regulatory Motifs
Author: Jayantilal, Tushar Kumar
School: The University Of Texas At Arlington (2502) Degree: Ms Date: 2006 Pp: 89



Title: Approaches to Clustering Gene Expression Time Course Data
Author: Krishnamurthy, Praveen
School: State University Of New York At Buffalo (0656) Degree: Ms Date: 2006 Pp: 68


Title: Modeling Infectious Disease Spread Using Global Stochastic Field Simulation
Author: Venkatachalam, Sangeeta
School: University Of North Texas (0158) Degree: Me Date: 2006 Pp: 73


Title: Development of Methods for the Isolation sand Cloning of Metagenomic DNA,
And Screening Of Metagenomic Libraries for Anticancer and Antifungal Activity
Author: Eagly, Rebecca R.
School: The University Of Alabama In Huntsville (0278) Degree: Ms
Date: 2006 Pp: 1023


Title: DNA Looping: Three-Dimensional Computer Graphics Models And
Statistical Mechanics
Author: McEwen, Abbye Elizabeth
School: The University Of Texas At Dallas (0382) Degree: Me Date: 2006 Pp: 81


Title: A Computational Geometry Approach to the Analysis of Structure-Function
Relationship in Beta Strand Proteins
Author: Alsheddi, Tariq A
School: George Mason University (0883) Date: 2006 Pp: 133


Title: The Design and Evaluation of an Assistive Application for Dialysis Patients
Author: Siek, Katie A.
School: Indiana University (0093) Date: 2006 Pp: 312


Title: Identification of Gene Regulatory Networks with Computational
Comparative Genomics
Author: Wang, Ting
School: Washington University In St. Louis (0252) Date: 2006 Pp: 244


Title: Using Expressed Sequence Tags to Improve Gene Structure Annotation
Author: Wei, Chaochun
School: Washington University In St. Louis (0252) Degree: DSc Date: 2006 Pp: 123


Title: Methods for Cluster Analysis and Validation in Microarray Gene Expression Data
Author: Kosorukoff, Alexander Lvovich
School: University Of Illinois At Urbana-Champaign (0090) Date: 2006 Pp: 103



Title: Methods for Cluster Analysis and Validation in Microarray Gene Expression Data
Author: Kosorukoff, Alexander Lvovich
School: University Of Illinois At Urbana-Champaign (0090) Date: 2006 Pp: 103


Title: Advanced Data Mining Techniques for Identifying Correlation between Genes
Expression and Promoters
Author: Lu, Yi
School: Wayne State University (0254) Date: 2006 Pp: 119


Title: Sequence Alignment
Author: Chia, Nicholas
School: The Ohio State University (0168) Date: 2006 Pp: 100


Title: Method Development and Application in Protein Structure Prediction,
Computational Molecular Docking and Network Biology
Author: Liu, Song
School: State University of New York At Buffalo (0656)


Title: Integrated Feature Subset Selection/Extraction with Applications
in Bioinformatics
Author: Xu, Xian
School: State University Of New York At Buffalo (0656) Date: 2006 Pp: 209


Title: Embedded Clustering Systems With Biological Data. Mining Applications
Author: Chen, Yonghui
School: The University Of Alabama at Birmingham (0005)


Title: Computational Methods for Predicting Transcription Factor Binding Sites
Author: Osada, Robert Radoslaw Zygmunt
School: Princeton University (0181) Date: 2006 Pp: 90


Title: Large-Scale Methods in Computational Genomics
Author: Kalyanaraman, Anantharaman
School: Iowa State University (0097) Date: 2006 Pp: 142


Title: From Pathway to Regulon in Arabidopsis
Author: Mentzen, Wieslawa Izabela
School: Iowa State University (0097) Date: 2006 Pp: 74


Title: Abstracts Computational Studies with Ests: Assembly, Snp Detection,
And Applications in Alternative Splicing
Author: Wang, Jianmin
School: Iowa State University (0097) Date: 2006 Pp: 120


Title: Sequence Comparison Methods, Statistics, and Applications
Author: Ye, Liang
School: Iowa State University (0097) Date: 2006. Pp: 119


Title: Information Fusion of Multiple Genomic Sensors for Clustering And
Cis-Regulatory Element Identification
Author: Kasturi, Jyotsna
School: The Pennsylvania State University (0176) Date: 2006 Pp: 209



Title: Detecting Patterns of Natural Selection Using Bayesian Generalized
Linear Models
Author: Merl, Daniel M.
School: University Of California, Santa Cruz (0036) Date: 2006 Pp: 158


Title: Using Variation and Constraint to Understand Functional Elements In The Human Genome
Author: Thomas, Daryl Jay
School: University Of California, Santa Cruz (0036) Date: 2006 Pp: 368


Title: Local Motion and Local Accuracy in Protein Backbone
Author: Davis, Ian W.
School: Duke University (0066) Degree: Phd Date: 2006 Pp : 333



Title: Mathematical Modeling of Signal Transduction And Cell Motility In
Tumor Angiogenesis
Author: Tarfulea, Nico1eta Eugenia
School: University Of Minnesota (0130) Date: 2006 Pp: 157


Title: Structured Motifs In Biological Sequences: Search And Extraction
Author: Zhang, Yongqiang
School: Rensselaer Polytechnic Institute (0185) Date: 2006 Pp: 97


Title: Evolutionary Matching Of Protein Local Surfaces for Predicting And
Characterizing Biochemical Functions
Author: Tseng, Yan Yuan
School: University Of Illinois At Chicago (0799) Date: 2006 Pp: 151


Title: Design, Development and Analysis of Bioinformatics and
Chemoinformatics Databases
Author: Dou, Yimeng
School: University Of California, Irvine Date: 2006 Pp: 78


Title: Finding Your Match: Techniques for Improving Sequence Alignment in
DNA and RNA
Author: Gill, Ofer Hirsch'
School: New York University (0146) Date: 2006 Pp: 116



Title: Finding Your Match: Techniques for Improving Sequence Alignment in
DNA and RNA
Author: Hurlen, Natalie Christine
School: University Of California, San Diego (0033) Date: 2006 Pp: 178



Title: Sequence Analysis Methods for the Detection Of Promoters And
Transcription Factor Binding Sites
Author: Naughton, Brian Thomas
School: Stanford University (0212) Date: 2006 Pp: 126


Title: Knowledge Discovery Using Multiple Sources of Biological Data
Author: Yang, Chengyong
School: Florida International University (1023) Date: 2006 Pp: 145


Title: Genetic Variation: Single-Nucleotide Effects and Their Random Nature
Author: Mosley, Coleman
School: University Of California, San Date: 2006 Pp: 207



Title: Analysis of Protein-Protein Interactions Using Multiple Biological Data Sets
Author: Lee, Hyunju
School: University Of Southern California (0208) Date: 2006 Pp: 146


Title: Inferring Protein Structure with Discriminative Learning and Network Diffusion
Author: Kuang, Rui
School: Columbia University (0054) Date: 2006


Title: Protein Structural Alignment and Application for Fold Recognition
Author: Chen, Yu
School: University Of Michigan (0127) Date: 2006 Pp: 91


Title: Systems Analysis of Energy Metabolism Elucidates the Roles of Mitochondria
In Human Health and Disease
Author: VO, Thuy D.
School: University Of California, San Diego (0033) Date: 2006 Pp: 202

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